R Programming for Biologists Online Training
Nov 17 - 21 | 08:00 PM (IST)
Event Information
BDG LifeSciences is a distinguished bioinformatics company established in 2010 and operates globally. Headquartered in India the company specializes in facilitating workshops, training programs, novel & innovative research projects, and online courses in technologies of bioinformatics & life science. The company is registered under the Ministry of MSME (Micro, Small, and Medium Enterprises), Government of India, with the registration number UDYAM-UP-01-0019151. Recently, BDG Lifesciences, India has authorized BBR Group Pty Ltd., Australia (ACN 608 550 849), to operate its programs in Australia & New Zealand.
With a focus on practical application of technology, where participants work on their own computer/laptop on software/servers, BDG LifeSciences has been a leader in the sector for the last 14 years.
Since its inception, BDG LifeSciences has successfully educated a diverse range of participants globally, including students, scientists, faculty members, professors, and corporate executives. To view the pictures of our previous events click here-1 and click here-2. To view, the listing of upcoming events kindly click here and our previous workshops can be viewed here. To view the video feedback of our previous events kindly visit our YouTube Channel
Innovation & creativity is an integral part of BDG Lifesciences and we always launch new programs on the newest topics. Now advancing in the technology we have launched a 5-day complete hands-on Online Training Program in R Programming for Biologists..
Video recording of each session will be provided at the end of the session to give the user a unique learning experience. On successful completion of the course participation certificate will be awarded.
TOPICS
- Introduction
- Microarray &RNA-Seq data retrieval
- Data pre-processing and cleaning
- Differential gene expression analysis
- Meta-analysis of multiple datasets
- Non-trait based WGCNA
- Trait-based WGCNA
- Protein-protein Interaction (PPI) network construction & analysis
- 3-node Feed-forward loop (FFL) network construction & analysis
- Kaplan-Meier (KM) survival analysis
- Mutational & tumor infiltration analysis
PRACTICAL APPLICATION
- Understanding microarray & RNA-Seq data
- Understanding the pre-processing to advanced level
- Gene expression in two different conditions or sample groups
- Meta-analysis of more than two datasets
- Understanding gene co-expression network and dynamics
- Understanding the PPI network and dynamics
- Understanding the FFL network and dynamics
- Understanding overall survival (OS) & relapse-free survival (RFS)
- Mutational & Tumor infiltration analysis
MODE
This session will be conducted online on Google Meet/Zoom/Microsoft Teams of which link will be sent to you 2 hours before the start of the session.
OUTCOME OF THIS PROGRAM: Participants will learn
- Various statical methods of normalization and pre-processing
- How differentially expressed genes can classified as oncogenes or tumor suppressors?
- Data interpretation
- How to handle multiple datasets at once?
- Hub co-expressed gene modules within gene co-expression network
- Pathways and enrichment analysis of hub module genes
- Driver miRNAs & TFs linked with hub module genes
- PPI network module and network characteristics
- Log-rank test
- Understand OS & RFS KM plots
- Mutational, tumor infiltration, & stage plot analysis
SCHEDULE
- Day 1 [1 Hour]: Theory session including introduction to Microarray & RNA-Seq data types, pre-processing algorithms, QC plots understanding, biological networks, algorithms, and graph characteristics. Installing all the software, packages, and pre-requisites before starting.
- Day 2 [1 Hour]:Microarray & RNA-Seq data analysis and DEGs identification
- Day 3 [1 Hour]: Gene co-expression network construction via WGCNA (non-trait & trait-based)
- Day 4 [1 Hour]: PPI network construction and analysis and Plotting of KM plots with TCGA data
- Day 5 [1 Hour]: Mutational, tumor infiltration, & meta-analysis
SYSTEM REQUIREMENT
- Any OS (Windows/Mac/Ubuntu) with internet connection
- R 4.4.1 (Download from this link: https://cran.r-project.org/)
- RStudio (Download from this link: https://posit.co/download/rstudio-desktop/)
- Rtools44 (Download from this link: https://cran.r-project.org/bin/windows/Rtools/rtools44/rtools.html)
- Cytoscape v3.10.1 (Download from this link: https://cytoscape.org/download_old_versions.html)
PRE-REQUISITES:
- limma
- DESeq2
- ggplot2
- NOISeq
- WGCNA
- survminer
TARGET AUDIENCE
Student: Bachelor, Masters, PhD, MBBS, MD students as well as Faculty and Professors from Microbiology, Biochemistry, Biotechnology, Immunology, Medicine, Pharmacy, Pharmaceutical Chemistry, Biomedical Technology, Genetics, Bioinformatics, Plant Science and Life Sciences.
Professionals: Resident Doctors, Biotechnology, Bioinformatics, Medicine and Pharmaceutical scientists from industry, academia, and regulatory agencies. Hands-on exercises will be performed individually using software tools on your own laptops. (no prior experience required).
RESOURCE PERSON
Mr. Prithvi Singh, Technical Associate, BDG Lifesciences is a highly skilled computational biologist with a strong background and passion for the field. He has authored over 40 research publications in prestigious international peer-reviewed journals. His expertise lies in RNA-Seq and microarray data analysis, biological network analysis, univariate & multivariate survival analysis, and cancer genetics. Throughout his career, he has collaborated with leading professionals, scientists, faculties, and doctors from around the world on various research projects. He plays an active role in designing new computational biology pipelines to advance the field..
T & C
- It is recommended to provide GMAIL email address.
- Video recording of each session will be provided at the end of the session to give the user a unique learning experience.
- Interactive training sessions will be conducted on Google Meet/Zoom so to give users a better learning experience.
- As it is with a LIVE TRAINER hence practical application, i.e., the experiments/tasks to be performed can be done in the best explainable manner.
- In this Online Workshop, there will be a LIVE trainer who will solve queries along with training.
- Make sure you register under the right category. If you register under the wrong category then your registration will be invalid and NO REFUND WILL BE MADE IN THIS CASE. This is your mistake and the company is not responsible for it.
- To avoid this do read the description of the ticket before selecting and proceeding with payment.
- You need to upload your professional ID which can be your Student ID Card or Research Institute ID Card or Company ID Card.
- The certificate will be issued as per the details which you provide in the registration form while registering before payment.
- Once you register relax we will send you the meeting link after the workshop registration gets over.
- The program is SELF-PACED.
- After each session video of that particular session will be shared with you so you can go through as many times as you want and perfect yourself in the topics & tasks.
- If you miss any session then NO PROBLEM you can still perform the tasks by going through the video of that particular session.
- We want to make sure that you learn properly hence the training certificate will be given ONLY on successful completion of all the tasks given by the trainer.
- The certificates of all our Online programs are sent by email(softcopy) which has a unique barcode. You can take a print of that on heavy cardstock or photo paper and get it laminated if required.
- The registration is NON-REFUNDABLE and NON-TRANSFERABLE.
- BDG Lifesciences (OPC) Pvt. Ltd., India reserves the right of admission in all our programs.
- If you are removed or your registration is canceled then there will be no answer to that. We have our own reasons for such an act of ours
- If we do not wish to give this workshop to any participant then we will refund their amount.
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